SNP Profiles of IMC 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AC	AG	AC	AA	GG	GG	CC	AA	GG	GG	AA	GG	CC
1._GC-04-042-3-06	AC	AC	AG	AC	TT	CC	GG	GG	AA	CC	GG	TT	CC	GG
2._GC-04-042-3-06	AC	AC	AG	AC	TT	CC	GG	GG	AA	CC	GG	TT	CC	GG
3._GC-04-042-3-06	AC	AC	AG	AC	TT	CC	_	GG	AA	CC	GG	TT	CC	GG
4._GC-04-042-3-06	AC	AC	AG	AC	TT	CC	GG	GG	AA	CC	GG	TT	CC	GG
5._IMC_2	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
6._IMC_2	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
7._IMC_2	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
8._RUQ_828	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
9._IMC_2	_	_	_	_	_	CC	_	_	AA	_	_	_	_	_
10._RUQ_828	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
11._IMC_2	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	CC	GG	AG	GG	CC	AA	CC	AG	AA	AG
1._GC-04-042-3-06	TT	TT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	TT	CT
2._GC-04-042-3-06	TT	TT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	TT	CT
3._GC-04-042-3-06	TT	TT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	TT	CT
4._GC-04-042-3-06	TT	TT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	TT	CT
5._IMC_2	_	TT	TT	_	CC	_	CT	_	CC	TT	GG	AG	TT	CT
6._IMC_2	_	TT	TT	_	CC	_	CT	_	CC	TT	GG	AG	TT	CT
7._IMC_2	_	TT	TT	_	CC	_	CT	_	CC	TT	GG	AG	TT	CT
8._RUQ_828	_	TT	TT	_	CC	_	CT	_	CC	TT	GG	AG	TT	CT
9._IMC_2	_	TT	TT	_	CC	_	CT	_	CC	TT	GG	AG	TT	CT
10._RUQ_828	_	TT	_	CT	_	_	_	CC	CC	TT	GG	AG	TT	CT
11._IMC_2	_	GG	TT	_	CC	_	_	_	AC	TT	CG	AG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	AC	GG	AG	GG	AG	CG	CC	TT	TT	AG	GG
1._GC-04-042-3-06	CC	TT	GG	AC	CC	AG	GG	CT	CG	GG	AA	TT	AG	GG
2._GC-04-042-3-06	CC	TT	GG	AC	CC	AG	GG	CT	CG	GG	AA	TT	AG	GG
3._GC-04-042-3-06	CC	TT	GG	AC	CC	AG	GG	CT	CG	GG	AA	TT	AG	GG
4._GC-04-042-3-06	CC	TT	GG	AC	CC	AG	_	CT	CG	GG	AA	TT	AG	GG
5._IMC_2	CC	_	_	AC	CC	AG	_	CT	CG	_	_	TT	_	_
6._IMC_2	CC	_	_	AC	CC	AG	_	CT	CG	_	_	TT	_	_
7._IMC_2	CC	_	_	AC	CC	AG	_	CT	CG	_	_	TT	_	_
8._RUQ_828	CC	_	_	AC	CC	AG	_	CT	CG	_	_	TT	_	_
9._IMC_2	CC	_	_	AC	CC	AG	_	CT	CG	_	_	TT	_	_
10._RUQ_828	_	_	GG	AC	CC	AG	_	CT	_	_	_	_	AG	GG
11._IMC_2	_	_	_	AC	_	_	_	CT	GG	_	_	TT	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	GG	GG	GG	GG	AT	GG	GG	AA	AC	AG	AC	GG	CG
1._GC-04-042-3-06	AT	CC	GG	GG	GG	AT	CC	_	AA	AC	AG	GT	GG	GG
2._GC-04-042-3-06	AT	CC	GG	GG	GG	AT	CC	_	AA	AC	AG	GT	GG	GG
3._GC-04-042-3-06	AT	CC	GG	GG	GG	AT	CC	_	AA	AC	AG	GT	GG	GG
4._GC-04-042-3-06	AT	CC	GG	GG	GG	AT	CC	_	AA	AC	AG	GT	GG	GG
5._IMC_2	AT	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
6._IMC_2	AT	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
7._IMC_2	AT	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
8._RUQ_828	AT	_	_	_	AG	_	_	_	_	AC	_	GT	_	GG
9._IMC_2	AT	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
10._RUQ_828	AT	_	_	_	_	_	CC	_	_	AC	_	GT	_	CG
11._IMC_2	AA	_	_	_	GG	_	_	_	_	CC	_	GG	_	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	AG	GG	AA	AA	AC	GG	AA	AA	AC	AA	AC	CG
1._GC-04-042-3-06	AC	CC	CT	CC	AA	AA	GT	GG	TT	TT	GT	TT	AC	CG
2._GC-04-042-3-06	AC	CC	CT	CC	AA	AA	GT	GG	TT	TT	GT	TT	AC	CG
3._GC-04-042-3-06	AC	CC	CT	CC	AA	AA	GT	GG	TT	TT	GT	TT	AC	CG
4._GC-04-042-3-06	AC	CC	CT	CC	AA	AA	GT	GG	TT	TT	GT	TT	AC	CG
5._IMC_2	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_
6._IMC_2	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_
7._IMC_2	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_
8._RUQ_828	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_
9._IMC_2	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_
10._RUQ_828	AC	_	CT	CC	_	_	GT	GG	TT	_	_	TT	AC	_
11._IMC_2	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	GG	AA	GG	GG	CC	GG	GG	GG	AT	AA	AA	X_X	X_X
1._GC-04-042-3-06	AA	CC	TT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
2._GC-04-042-3-06	AA	CC	TT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
3._GC-04-042-3-06	AA	CC	TT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
4._GC-04-042-3-06	AA	CC	TT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
5._IMC_2	_	CC	TT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
6._IMC_2	_	CC	TT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
7._IMC_2	_	CC	TT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
8._RUQ_828	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
9._IMC_2	_	CC	TT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
10._RUQ_828	_	CC	TT	_	-	CC	_	_	_	_	_	AA	X_X	X_X
11._IMC_2	_	CC	TT	_	_	_	CC	_	_	AA	TT	AA	X_X	X_X

Input profile: IMC_2 GC-04-42-3-6

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

1._IMC_2 GC-04-042-3-06

49.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

2._IMC_2 GC-04-042-3-06

49.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._IMC_2 GC-04-042-3-06

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._IMC_2 GC-04-042-3-06

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

5._IMC_2

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

6._IMC_2

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

7._IMC_2

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

8._IMC_2 RUQ_828

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._IMC_2

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._IMC_2 RUQ_828

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._IMC_2

40 %
30 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998